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1

Single-Molecule FRET Spectroscopy and the Polymer Physics of Unfolded and Intrinsically Disordered Proteins

Schuler, Benjamin, Soranno, Andrea, Hofmann, Hagen, Nettels, Daniel

Journal:

Annual Review of Biophysics

Année:

2016

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2016

2

Extreme disorder in an ultrahigh-affinity protein complex

Borgia, Alessandro, Borgia, Madeleine B., Bugge, Katrine, Kissling, Vera M., Heidarsson, Pétur O., Fernandes, Catarina B., Sottini, Andrea, Soranno, Andrea, Buholzer, Karin J., Nettels, Daniel, Kragel

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 11.50 MB

english, 2018

3

Kinetics of Contact Formation and End-to-End Distance Distributions of Swollen Disordered Peptides

Soranno, Andrea, Longhi, Renato, Bellini, Tommaso, Buscaglia, Marco

Journal:

Biophysical Journal

Année:

2009

Langue:

english

Fichier:

PDF, 892 KB

english, 2009

4

Conformations and Dynamics of Polypeptide Chains Revealed By Tryptophan-Cysteine Contact Formation Kinetics

Buscaglia, Marco, Soranno, Andrea, Cabassi, Francesca, Longhi, Renato, Bellini, Tommaso

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 37 KB

english, 2010

5

Charge Interactions Can Dominate the Dimensions of Intrinsically Disordered Proteins

Soranno, Andrea, Müller-Späth, Sonja, Hirschfeld, Verena, Hofmann, Hagen, Rüegger, Stefan, Reymond, Luc, Nettels, Daniel, Schuler, Benjamin

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 53 KB

english, 2011

6

Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy

Borgia, Alessandro, Wensley, Beth G., Soranno, Andrea, Nettels, Daniel, Borgia, Madeleine B., Hoffmann, Armin, Pfeil, Shawn H., Lipman, Everett A., Clarke, Jane, Schuler, Benjamin

Journal:

Nature Communications

Année:

2012

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2012

7

Single-molecule spectroscopy reveals polymer effects of disordered proteins in crowded environments

Soranno, Andrea, Koenig, Iwo, Borgia, Madeleine B., Hofmann, Hagen, Zosel, Franziska, Nettels, Daniel, Schuler, Benjamin

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2014

8

Folding Kinetics of Small Proteins Revealed by Tryptophan-Cysteine Contact Formation Experiments

Buscaglia, Marco, Soranno, Andrea, Cellmer, Troy, Longhi, Renato, Bellini, Tommaso

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 34 KB

english, 2011

9

Single-Molecule Spectroscopy Reveals Polymer Effects of Disordered Proteins in Crowded Environments

Soranno, Andrea, Koenig, Iwo, Borgia, Madeleine B., Hofmann, Hagen, Zosel, Franziska, Nettels, Daniel, Schuler, Ben

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 115 KB

english, 2014

10

Single-molecule spectroscopy of protein conformational dynamics in live eukaryotic cells

König, Iwo, Zarrine-Afsar, Arash, Aznauryan, Mikayel, Soranno, Andrea, Wunderlich, Bengt, Dingfelder, Fabian, Stüber, Jakob C, Plückthun, Andreas, Nettels, Daniel, Schuler, Benjamin

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2015

11

Transient misfolding dominates multidomain protein folding

Borgia, Alessandro, Kemplen, Katherine R., Borgia, Madeleine B., Soranno, Andrea, Shammas, Sarah, Wunderlich, Bengt, Nettels, Daniel, Best, Robert B., Clarke, Jane, Schuler, Benjamin

Journal:

Nature Communications

Année:

2015

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2015

12

Charge interactions can dominate the dimensions of intrinsically disordered proteins

Sonja Müller-Späth, Andrea Soranno, Verena Hirschfeld, Hagen Hofmann, Stefan Rüegger, Luc Reymond, Daniel Nettels, Benjamin Schuler and Devarajan Thirumalai

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2010

13

Surprising Abundance of Misfolding during Refolding of Multidomain Proteins

Borgia, Alessandro, Kemplen, Katherine R., Borgia, Madeleine B., Best, Robert B., Soranno, Andrea, Nettels, Daniel, Wunderlich, Bengt, Clarke, Jane, Schuler, Benjamin

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 41 KB

english, 2015

14

Charge Patterning, Salt Screening and Denaturant Expansion in the CGRP Neuropeptide

Sizemore, Sara, Cope, Stephanie, Soranno, Andrea, Vaiana, Sara

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 59 KB

english, 2015

15

Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS

Aznauryan, Mikayel, Delgado, Leonildo, Soranno, Andrea, Nettels, Daniel, Huang, Jie-rong, Labhardt, Alexander M., Grzesiek, Stephan, Schuler, Benjamin

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2016

16

Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods

Borgia, Alessandro, Zheng, Wenwei, Buholzer, Karin, Borgia, Madeleine B., Schüler, Anja, Hofmann, Hagen, Soranno, Andrea, Nettels, Daniel, Gast, Klaus, Grishaev, Alexander, Best, Robert B., Schuler, B

Journal:

Journal of the American Chemical Society

Année:

2016

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2016

17

Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations

Soranno, Andrea, Holla, Andrea, Dingfelder, Fabian, Nettels, Daniel, Makarov, Dmitrii E., Schuler, Benjamin

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2017

18

Integrated View of Internal Friction in Unfolded Proteins from Single-Molecule FRET, Contact Quenching, Theory, and Simulations

Soranno, Andrea, Holla, Andrea, Dingfelder, Fabian, Nettels, Daniel, Makarov, Dmitrii E., Schuler, Benjamin

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 44 KB

english, 2017

19

Combining short- and long-range fluorescence reporters with simulations to explore the intramolecular dynamics of an intrinsically disordered protein

Zosel, Franziska, Haenni, Dominik, Soranno, Andrea, Nettels, Daniel, Schuler, Benjamin

Journal:

The Journal of Chemical Physics

Année:

2017

Langue:

english

Fichier:

PDF, 7.27 MB

english, 2017

20

Internal friction in an intrinsically disordered protein—Comparing Rouse-like models with experiments

Soranno, Andrea, Zosel, Franziska, Hofmann, Hagen

Journal:

The Journal of Chemical Physics

Année:

2018

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2018

21

Comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”

Best, Robert B., Zheng, Wenwei, Borgia, Alessandro, Buholzer, Karin, Borgia, Madeleine B., Hofmann, Hagen, Soranno, Andrea, Nettels, Daniel, Gast, Klaus, Grishaev, Alexander, Schuler, Benjamin

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 340 KB

english, 2018

22

Local and Global Dynamics in Intrinsically Disordered Synuclein

Rezaei-Ghaleh, Nasrollah, Parigi, Giacomo, Soranno, Andrea, Holla, Andrea, Becker, Stefan, Schuler, Benjamin, Luchinat, Claudio, Zweckstetter, Markus

Journal:

Angewandte Chemie International Edition

Année:

2018

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2018

23

Local and Global Dynamics in Intrinsically Disordered Synuclein

Rezaei-Ghaleh, Nasrollah, Parigi, Giacomo, Soranno, Andrea, Holla, Andrea, Becker, Stefan, Schuler, Benjamin, Luchinat, Claudio, Zweckstetter, Markus

Journal:

Angewandte Chemie

Année:

2018

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2018

24

Dynamics of Structural Elements of GB1 β-Hairpin Revealed by Tryptophan–Cysteine Contact Formation Experiments

Soranno, Andrea, Cabassi, Francesca, Orselli, Maria Elena, Cellmer, Troy, Gori, Alessandro, Longhi, Renato, Buscaglia, Marco

Journal:

Journal of Physical Chemistry B

Année:

2018

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2018

25

Shelterin Components Modulate the Phase-Separation Propensity of Telomeres

Soranno, Andrea, Incicco, Jeremias, De Bona, Paolo, Tomko, Eric, Galburt, Eric, Galletto, Roberto

Journal:

Biophysical Journal

Année:

2019

Fichier:

PDF, 62 KB

2019

26

Single-Molecule Conformational Analysis of Apolipoprotein E

Stuchell-Brereton, Melissa D., Baban, Berevan, DeKoster, Greg, Frieden, Carl, Soranno, Andrea

Journal:

Biophysical Journal

Année:

2019

Langue:

english

Fichier:

PDF, 46 KB

english, 2019

27

Single-Molecule Conformational Analysis of Apolipoprotein E

Stuchell-Brereton, Melissa D., Baban, Berevan, DeKoster, Greg, Frieden, Carl, Soranno, Andrea

Journal:

Biophysical Journal

Année:

2019

Fichier:

PDF, 46 KB

2019

28

Extracting Sequence-Dependent Intra-Protein Interaction Parameters from Photo-Induced Electron Transfer Measurements of IDPs

Gibson, Felicia, Soranno, Andrea, Zheng, Wenwei, Vaiana, Sara M.

Journal:

Biophysical Journal

Année:

2019

Langue:

english

Fichier:

PDF, 44 KB

english, 2019

29

Extracting Sequence-Dependent Intra-Protein Interaction Parameters from Photo-Induced Electron Transfer Measurements of IDPs

Gibson, Felicia, Soranno, Andrea, Zheng, Wenwei, Vaiana, Sara M.

Journal:

Biophysical Journal

Année:

2019

Fichier:

PDF, 44 KB

2019

30

Branched unwinding mechanism of the Pif1 family of DNA helicases

Singh, Saurabh P., Soranno, Andrea, Sparks, Melanie A., Galletto, Roberto

Journal:

Proceedings of the National Academy of Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 2.72 MB

english, 2019

31

Evolutionarily Conserved Amino Acid Organization in Protein Low Complexity Regions Encodes Conformation, Dynamics and Assembly

Martin, Erik W., Holehouse, Alex S., Peran, Ivan, Incicco, Jeremias, Soranno, Andrea, Pappu, Rohit V., Mittag, Tanja

Journal:

Biophysical Journal

Année:

2020

Fichier:

PDF, 42 KB

2020

32

Physical basis of the disorder-order transition

Soranno, Andrea

Journal:

Archives of Biochemistry and Biophysics

Année:

2020

Fichier:

PDF, 3.22 MB

2020

33

Single-Molecule Fluorescence Spectroscopy of Non-Lipidated Forms of Apolipoprotein E

Stuchell-Brereton, Melissa D., Calderone, Logan, Baban, Berevan, Cubuk, Jasmine, DeKoster, Greg, Frieden, Carl, Soranno, Andrea

Journal:

Biophysical Journal

Année:

2020

Fichier:

PDF, 47 KB

2020

34

Depletion interactions modulate the binding between disordered proteins in crowded environments

Zosel, Franziska, Soranno, Andrea, Buholzer, Karin J., Nettels, Daniel, Schuler, Benjamin

Journal:

Proceedings of the National Academy of Sciences

Année:

2020

Fichier:

PDF, 1.39 MB

2020

35

Apolipoprotein E: Structural Insights and Links to Alzheimer Disease Pathogenesis

Chen, Yun, Strickland, Michael R., Soranno, Andrea, Holtzman, David M.

Journal:

Année:

2020

Fichier:

PDF, 3.33 MB

2020